PyCorrectedEmissionCT
PyCorrectedEmissionCT (corrct)
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corrct
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PyCorrectedEmissionCT
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Index
Index
A
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B
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C
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D
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E
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F
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G
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I
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K
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
A
A (corrct.projectors.ProjectorMatrix attribute)
absolute() (corrct.operators.BaseTransform method)
(corrct.operators.TransformConvolution method)
(corrct.operators.TransformDiagonalScaling method)
(corrct.operators.TransformFunctions method)
(corrct.projectors.ProjectorMatrix method)
(corrct.struct_illum.ProjectorGhostImaging method)
add_noise() (in module corrct.testing)
adj_shape (corrct.operators.BaseTransform attribute)
(corrct.operators.ProjectorOperator attribute)
(corrct.operators.TransformDecimatedWavelet attribute)
(corrct.operators.TransformFourier attribute)
(corrct.operators.TransformFunctions attribute)
(corrct.operators.TransformGradient attribute)
(corrct.operators.TransformIdentity attribute)
(corrct.operators.TransformLaplacian attribute)
(corrct.operators.TransformStationaryWavelet attribute)
adjust_sampling_scaling() (corrct.struct_illum.ProjectorGhostImaging method)
angle_rad (corrct.physics.xrf.DetectorXRF attribute)
angles_det_rad (corrct.attenuation.AttenuationVolume attribute)
angles_rad (corrct.alignment.shifts.DetectorShiftsBase attribute)
(corrct.alignment.shifts.DetectorShiftsPRE attribute)
(corrct.alignment.shifts.DetectorShiftsXC attribute)
angles_rot_rad (corrct.attenuation.AttenuationVolume attribute)
(corrct.projectors.ProjectorUncorrected property)
apply_filter() (corrct.filters.Filter method)
apply_flat_field() (in module corrct.processing.pre)
apply_minus_log() (in module corrct.processing.pre)
apply_propagation_filter() (in module corrct.physics.phase)
apply_proximal() (corrct.data_terms.DataFidelity_Huber method)
(corrct.data_terms.DataFidelity_KL method)
(corrct.data_terms.DataFidelity_l1 method)
(corrct.data_terms.DataFidelity_l2 method)
(corrct.data_terms.DataFidelity_l2b method)
(corrct.data_terms.DataFidelity_ln method)
(corrct.data_terms.DataFidelityBase method)
(corrct.regularizers.BaseRegularizer method)
(corrct.regularizers.Constraint_LowerLimit method)
(corrct.regularizers.Constraint_UpperLimit method)
(corrct.regularizers.Regularizer_dwl method)
(corrct.regularizers.Regularizer_swl method)
(corrct.regularizers.Regularizer_vl1wl method)
(corrct.regularizers.Regularizer_VTV method)
assign_data() (corrct.data_terms.DataFidelity_Huber method)
(corrct.data_terms.DataFidelity_l1b method)
(corrct.data_terms.DataFidelity_l2 method)
(corrct.data_terms.DataFidelity_l2b method)
(corrct.data_terms.DataFidelity_wl2 method)
(corrct.data_terms.DataFidelityBase method)
att_vol_angles (corrct.projectors.ProjectorAttenuationXRF attribute)
AttenuationVolume (class in corrct.attenuation)
axes (corrct.operators.BaseWaveletTransform attribute)
(corrct.operators.TransformDecimatedWavelet attribute)
(corrct.operators.TransformStationaryWavelet attribute)
azimuthal_integration() (in module corrct.processing.misc)
B
background (corrct.data_terms.DataFidelity_Huber attribute)
(corrct.data_terms.DataFidelity_KL attribute)
(corrct.data_terms.DataFidelity_l1 attribute)
(corrct.data_terms.DataFidelity_l12 attribute)
(corrct.data_terms.DataFidelity_l1b attribute)
(corrct.data_terms.DataFidelity_l2 attribute)
(corrct.data_terms.DataFidelity_l2b attribute)
(corrct.data_terms.DataFidelity_ln attribute)
(corrct.data_terms.DataFidelity_wl2 attribute)
(corrct.data_terms.DataFidelityBase attribute)
ball() (in module corrct.processing.misc)
BaseRegularizationEstimation (class in corrct.param_tuning)
BaseRegularizer (class in corrct.regularizers)
BaseRegularizer_med (class in corrct.regularizers)
BaseTransform (class in corrct.operators)
BaseWaveletTransform (class in corrct.operators)
BasisOptions (class in corrct.filters)
BasisOptionsBlocks (class in corrct.filters)
BasisOptionsWavelets (class in corrct.filters)
bin_imgs() (in module corrct.processing.pre)
bin_masks() (corrct.struct_illum.MaskCollection method)
binning_start (corrct.filters.BasisOptionsBlocks attribute)
(corrct.filters.FilterMR attribute)
binning_type (corrct.filters.BasisOptionsBlocks attribute)
(corrct.filters.FilterMR attribute)
bp() (corrct.operators.ProjectorOperator method)
(corrct.projectors.ProjectorAttenuationXRF method)
(corrct.projectors.ProjectorMatrix method)
(corrct.projectors.ProjectorUncorrected method)
(corrct.struct_illum.ProjectorGhostImaging method)
bp_angle() (corrct.projectors.ProjectorAttenuationXRF method)
(corrct.projectors.ProjectorUncorrected method)
C
circular_mask() (in module corrct.processing.misc)
collapse_detectors() (corrct.projectors.ProjectorAttenuationXRF method)
com() (in module corrct.processing.post)
combine_shifts_vu() (in module corrct.models)
compute_data_dual_dot() (corrct.data_terms.DataFidelityBase method)
compute_eigen_flats() (in module corrct.processing.pre)
compute_error_power() (in module corrct.testing)
compute_filter() (corrct.filters.Filter method)
(corrct.filters.FilterCustom method)
(corrct.filters.FilterFBP method)
(corrct.filters.FilterMR method)
compute_loss_values() (corrct.param_tuning.BaseRegularizationEstimation method)
(corrct.param_tuning.CrossValidation method)
(corrct.param_tuning.LCurve method)
compute_maps() (corrct.attenuation.AttenuationVolume method)
compute_possible_mask_sizes() (corrct.struct_illum.MaskGeneratorMURA static method)
compute_primal_dual_gap() (corrct.data_terms.DataFidelity_Huber method)
(corrct.data_terms.DataFidelity_KL method)
(corrct.data_terms.DataFidelity_l1 method)
(corrct.data_terms.DataFidelity_l2 method)
(corrct.data_terms.DataFidelity_l2b method)
(corrct.data_terms.DataFidelity_ln method)
(corrct.data_terms.DataFidelityBase method)
compute_reconstruction_and_loss() (corrct.param_tuning.BaseRegularizationEstimation method)
compute_reconstruction_error() (corrct.param_tuning.BaseRegularizationEstimation method)
compute_residual() (corrct.data_terms.DataFidelity_KL method)
(corrct.data_terms.DataFidelity_l2b method)
(corrct.data_terms.DataFidelity_wl2 method)
(corrct.data_terms.DataFidelityBase method)
(corrct.solvers.SART method)
compute_residual_norm() (corrct.data_terms.DataFidelity_Huber method)
(corrct.data_terms.DataFidelity_KL method)
(corrct.data_terms.DataFidelity_l1 method)
(corrct.data_terms.DataFidelity_l2 method)
(corrct.data_terms.DataFidelity_ln method)
(corrct.data_terms.DataFidelity_wl2 method)
(corrct.data_terms.DataFidelityBase method)
compute_update_primal() (corrct.regularizers.BaseRegularizer method)
Constraint_LowerLimit (class in corrct.regularizers)
Constraint_UpperLimit (class in corrct.regularizers)
convert_energy_to_wlength() (in module corrct.physics)
convert_wlength_to_energy() (in module corrct.physics)
corrct
module
corrct.alignment
module
corrct.alignment.centering
module
corrct.alignment.fitting
module
corrct.alignment.shifts
module
corrct.attenuation
module
corrct.data_terms
module
corrct.denoisers
module
corrct.filters
module
corrct.models
module
corrct.operators
module
corrct.param_tuning
module
corrct.physics
module
corrct.physics.materials
module
corrct.physics.phase
module
corrct.physics.xraylib_helper
module
corrct.physics.xrf
module
corrct.processing
module
corrct.processing.misc
module
corrct.processing.post
module
corrct.processing.pre
module
corrct.projectors
module
corrct.regularizers
module
corrct.solvers
module
corrct.struct_illum
module
corrct.testing
module
CP (in module corrct.solvers)
create_basis() (in module corrct.filters)
create_basis_wavelet() (in module corrct.filters)
create_random_test_mask() (in module corrct.param_tuning)
create_sino() (in module corrct.testing)
create_sino_transmission() (in module corrct.testing)
CrossValidation (class in corrct.param_tuning)
D
data (corrct.data_terms.DataFidelity_Huber attribute)
(corrct.data_terms.DataFidelity_KL attribute)
(corrct.data_terms.DataFidelity_l1 attribute)
(corrct.data_terms.DataFidelity_l12 attribute)
(corrct.data_terms.DataFidelity_l1b attribute)
(corrct.data_terms.DataFidelity_l2 attribute)
(corrct.data_terms.DataFidelity_l2b attribute)
(corrct.data_terms.DataFidelity_ln attribute)
(corrct.data_terms.DataFidelity_wl2 attribute)
(corrct.data_terms.DataFidelityBase attribute)
data_vwu (corrct.alignment.shifts.DetectorShiftsBase attribute)
(corrct.alignment.shifts.DetectorShiftsPRE attribute)
(corrct.alignment.shifts.DetectorShiftsXC attribute)
DataFidelity_Huber (class in corrct.data_terms)
DataFidelity_KL (class in corrct.data_terms)
DataFidelity_l1 (class in corrct.data_terms)
DataFidelity_l12 (class in corrct.data_terms)
DataFidelity_l1b (class in corrct.data_terms)
DataFidelity_l2 (class in corrct.data_terms)
DataFidelity_l2b (class in corrct.data_terms)
DataFidelity_ln (class in corrct.data_terms)
DataFidelity_wl2 (class in corrct.data_terms)
DataFidelityBase (class in corrct.data_terms)
decompose_qr_masks() (in module corrct.struct_illum)
denoise_image() (in module corrct.denoisers)
destripe_wlf_vwu() (in module corrct.processing.pre)
det_pos_xyz (corrct.models.ProjectionGeometry attribute)
det_shape_vu (corrct.models.ProjectionGeometry attribute)
det_u_xyz (corrct.models.ProjectionGeometry attribute)
det_v_xyz (corrct.models.ProjectionGeometry attribute)
DetectorShiftsBase (class in corrct.alignment.shifts)
DetectorShiftsPRE (class in corrct.alignment.shifts)
DetectorShiftsXC (class in corrct.alignment.shifts)
DetectorXRF (class in corrct.physics.xrf)
dir_shape (corrct.operators.BaseTransform attribute)
(corrct.operators.ProjectorOperator attribute)
(corrct.operators.TransformDecimatedWavelet attribute)
(corrct.operators.TransformFourier attribute)
(corrct.operators.TransformFunctions attribute)
(corrct.operators.TransformGradient attribute)
(corrct.operators.TransformIdentity attribute)
(corrct.operators.TransformLaplacian attribute)
(corrct.operators.TransformStationaryWavelet attribute)
direct_dwt() (corrct.operators.TransformDecimatedWavelet method)
direct_svd() (corrct.operators.TransformSVD method)
direct_swt() (corrct.operators.TransformStationaryWavelet method)
distance_mm (corrct.physics.xrf.DetectorXRF attribute)
divergence() (corrct.operators.TransformGradient method)
download_phantom() (in module corrct.testing)
dtype (corrct.attenuation.AttenuationVolume attribute)
(corrct.filters.Filter attribute)
(corrct.filters.FilterCustom attribute)
(corrct.regularizers.BaseRegularizer attribute)
(corrct.regularizers.BaseRegularizer_med attribute)
(corrct.regularizers.Constraint_LowerLimit attribute)
(corrct.regularizers.Constraint_UpperLimit attribute)
(corrct.regularizers.Regularizer_dwl attribute)
(corrct.regularizers.Regularizer_fft attribute)
(corrct.regularizers.Regularizer_Grad attribute)
(corrct.regularizers.Regularizer_Hub_dwl attribute)
(corrct.regularizers.Regularizer_Hub_swl attribute)
(corrct.regularizers.Regularizer_HubTV2D attribute)
(corrct.regularizers.Regularizer_HubTV3D attribute)
(corrct.regularizers.Regularizer_l1 attribute)
(corrct.regularizers.Regularizer_l12dwl attribute)
(corrct.regularizers.Regularizer_l12swl attribute)
(corrct.regularizers.Regularizer_l1dwl attribute)
(corrct.regularizers.Regularizer_l1med attribute)
(corrct.regularizers.Regularizer_l1swl attribute)
(corrct.regularizers.Regularizer_l2med attribute)
(corrct.regularizers.Regularizer_lap attribute)
(corrct.regularizers.Regularizer_lap1D attribute)
(corrct.regularizers.Regularizer_lap2D attribute)
(corrct.regularizers.Regularizer_lap3D attribute)
(corrct.regularizers.Regularizer_lnswl attribute)
(corrct.regularizers.Regularizer_smooth1D attribute)
(corrct.regularizers.Regularizer_smooth2D attribute)
(corrct.regularizers.Regularizer_smooth3D attribute)
(corrct.regularizers.Regularizer_swl attribute)
(corrct.regularizers.Regularizer_TNV attribute)
(corrct.regularizers.Regularizer_TV1D attribute)
(corrct.regularizers.Regularizer_TV2D attribute)
(corrct.regularizers.Regularizer_TV3D attribute)
(corrct.regularizers.Regularizer_vl1wl attribute)
(corrct.regularizers.Regularizer_vSVD attribute)
(corrct.regularizers.Regularizer_VTV attribute)
(corrct.struct_illum.MaskGenerator attribute)
(corrct.struct_illum.MaskGeneratorBernoulli attribute)
(corrct.struct_illum.MaskGeneratorHalfGaussian attribute)
(corrct.struct_illum.MaskGeneratorMURA attribute)
(corrct.struct_illum.MaskGeneratorPoint attribute)
E
emitted_local (corrct.attenuation.AttenuationVolume attribute)
estimate_resolution() (in module corrct.struct_illum)
explicit() (corrct.operators.BaseTransform method)
extent (corrct.models.VolumeGeometry property)
extract_peak_region_nd() (in module corrct.alignment.fitting)
extract_peak_regions_1d() (in module corrct.alignment.fitting)
F
FBP (class in corrct.solvers)
fbp() (corrct.struct_illum.ProjectorGhostImaging method)
fbp_filter (corrct.filters.Filter attribute)
(corrct.filters.FilterCustom attribute)
fft() (corrct.operators.TransformFourier method)
Filter (class in corrct.filters)
filter_fourier (corrct.filters.Filter property)
filter_name (corrct.filters.FilterFBP attribute)
filter_real (corrct.filters.Filter property)
FilterCustom (class in corrct.filters)
FilterFBP (class in corrct.filters)
FilterMR (class in corrct.filters)
FILTERS (corrct.filters.FilterFBP attribute)
find_background_from_margin() (in module corrct.processing.pre)
find_shifts_vu() (corrct.alignment.shifts.DetectorShiftsXC method)
fit_loss_min() (corrct.param_tuning.CrossValidation method)
fit_scale_bias() (in module corrct.processing.post)
fit_shifts_u_sad() (in module corrct.alignment.fitting)
fit_shifts_vu_xc() (in module corrct.alignment.fitting)
fit_shifts_zyx_xc() (in module corrct.alignment.fitting)
fit_sinusoid() (in module corrct.alignment.fitting)
fit_u() (corrct.alignment.shifts.DetectorShiftsPRE method)
fit_u_180() (corrct.alignment.shifts.DetectorShiftsXC method)
fit_u_360() (corrct.alignment.shifts.DetectorShiftsXC method)
fit_v() (corrct.alignment.shifts.DetectorShiftsPRE method)
fit_vu() (corrct.alignment.shifts.DetectorShiftsXC method)
fit_vu_accum_drifts() (corrct.alignment.shifts.DetectorShiftsXC method)
flip_adjoint (corrct.operators.TransformConvolution attribute)
FluoLine (class in corrct.physics.xrf)
fp() (corrct.operators.ProjectorOperator method)
(corrct.projectors.ProjectorAttenuationXRF method)
(corrct.projectors.ProjectorMatrix method)
(corrct.projectors.ProjectorUncorrected method)
(corrct.struct_illum.ProjectorGhostImaging method)
fp_angle() (corrct.projectors.ProjectorAttenuationXRF method)
(corrct.projectors.ProjectorUncorrected method)
frc() (in module corrct.processing.post)
G
generate_collection() (corrct.struct_illum.MaskGenerator method)
generate_mask() (corrct.struct_illum.MaskGenerator method)
(corrct.struct_illum.MaskGeneratorBernoulli method)
(corrct.struct_illum.MaskGeneratorHalfGaussian method)
(corrct.struct_illum.MaskGeneratorMURA method)
(corrct.struct_illum.MaskGeneratorPoint method)
geom_type (corrct.models.ProjectionGeometry attribute)
Geometry (class in corrct.models)
get_3d() (corrct.models.ProjectionGeometry method)
(corrct.models.VolumeGeometry method)
get_attenuation() (corrct.physics.materials.VolumeMaterial method)
get_available_filters() (corrct.filters.FilterFBP method)
get_compound() (in module corrct.physics.xraylib_helper)
get_compton_scattering() (corrct.physics.materials.VolumeMaterial method)
get_default_from_data() (corrct.models.VolumeGeometry static method)
get_default_from_volume() (corrct.models.VolumeGeometry static method)
get_default_parallel() (corrct.models.ProjectionGeometry static method)
get_delta_beta() (in module corrct.physics.phase)
get_delta_beta_curves() (in module corrct.physics.phase)
get_element_mass_fraction() (corrct.physics.materials.VolumeMaterial method)
get_element_number() (in module corrct.physics.xraylib_helper)
get_element_number_and_symbol() (in module corrct.physics.xraylib_helper)
get_energy() (corrct.physics.xrf.LinesSiegbahn static method)
get_field_scaled() (corrct.models.ProjectionGeometry method)
get_fluo_yield() (corrct.physics.materials.VolumeMaterial method)
get_interval_shifts() (corrct.struct_illum.MaskGenerator method)
get_lambda_range() (corrct.param_tuning.BaseRegularizationEstimation static method)
get_linear_attenuation_coefficient() (in module corrct.physics.materials)
get_lines() (corrct.physics.xrf.LinesSiegbahn static method)
get_maps() (corrct.attenuation.AttenuationVolume method)
get_mask() (corrct.struct_illum.MaskCollection method)
get_padding_size() (corrct.filters.Filter method)
get_pre_weights() (corrct.models.ProjectionGeometry method)
(corrct.operators.ProjectorOperator method)
(corrct.projectors.ProjectorUncorrected method)
get_prj_geom_cone() (in module corrct.models)
get_prj_geom_parallel() (in module corrct.models)
get_projector_args() (corrct.attenuation.AttenuationVolume method)
get_propagation_filter() (in module corrct.physics.phase)
get_QR_decomposition() (corrct.struct_illum.MaskCollection method)
get_random_shifts() (corrct.struct_illum.MaskGenerator method)
get_rot_axis_dir() (in module corrct.models)
get_sequential_shifts() (corrct.struct_illum.MaskGenerator method)
get_vol_geom_from_data() (in module corrct.models)
get_vol_geom_from_volume() (in module corrct.models)
gradient() (corrct.operators.TransformGradient method)
I
ifft() (corrct.operators.TransformFourier method)
incident_local (corrct.attenuation.AttenuationVolume attribute)
indx (corrct.physics.xrf.FluoLine attribute)
info() (corrct.data_terms.DataFidelityBase method)
(corrct.regularizers.BaseRegularizer method)
(corrct.regularizers.BaseRegularizer_med method)
(corrct.regularizers.Constraint_LowerLimit method)
(corrct.regularizers.Constraint_UpperLimit method)
(corrct.regularizers.Regularizer_dwl method)
(corrct.regularizers.Regularizer_swl method)
(corrct.solvers.FBP method)
(corrct.solvers.MLEM method)
(corrct.solvers.PDHG method)
(corrct.solvers.SIRT method)
(corrct.solvers.Solver method)
(corrct.struct_illum.MaskCollection method)
(corrct.struct_illum.MaskGenerator method)
initialize() (corrct.filters.FilterMR method)
initialize_dual() (corrct.data_terms.DataFidelityBase method)
(corrct.regularizers.BaseRegularizer method)
initialize_sigma_tau() (corrct.regularizers.BaseRegularizer method)
(corrct.regularizers.BaseRegularizer_med method)
(corrct.regularizers.Constraint_LowerLimit method)
(corrct.regularizers.Constraint_UpperLimit method)
(corrct.regularizers.Regularizer_dwl method)
(corrct.regularizers.Regularizer_fft method)
(corrct.regularizers.Regularizer_Grad method)
(corrct.regularizers.Regularizer_l1 method)
(corrct.regularizers.Regularizer_lap method)
(corrct.regularizers.Regularizer_lnswl method)
(corrct.regularizers.Regularizer_swl method)
(corrct.regularizers.Regularizer_TNV method)
(corrct.regularizers.Regularizer_vl1wl method)
(corrct.regularizers.Regularizer_vSVD method)
inspect_fourier_img() (in module corrct.processing.misc)
inspect_masks() (corrct.struct_illum.MaskCollection method)
inverse_dwt() (corrct.operators.TransformDecimatedWavelet method)
inverse_svd() (corrct.operators.TransformSVD method)
inverse_swt() (corrct.operators.TransformStationaryWavelet method)
is_3D() (corrct.models.VolumeGeometry method)
is_initialized (corrct.filters.FilterMR attribute)
is_square() (corrct.models.VolumeGeometry method)
is_symm (corrct.operators.TransformConvolution attribute)
iterations (corrct.solvers.SolutionInfo attribute)
K
kernel (corrct.operators.TransformConvolution attribute)
L
lambda_smooth (corrct.filters.FilterMR attribute)
laplacian() (corrct.operators.TransformLaplacian method)
LCurve (class in corrct.param_tuning)
level (corrct.filters.BasisOptionsWavelets attribute)
lines (corrct.physics.xrf.LinesSiegbahn attribute)
lines_intersection() (in module corrct.processing.misc)
LinesSiegbahn (class in corrct.physics.xrf)
lower() (corrct.data_terms.DataFidelityBase method)
(corrct.regularizers.BaseRegularizer method)
(corrct.solvers.Solver method)
(corrct.struct_illum.MaskCollection method)
M
maps (corrct.attenuation.AttenuationVolume attribute)
mask_dims (corrct.struct_illum.MaskCollection attribute)
mask_shape (corrct.models.VolumeGeometry property)
mask_support (corrct.struct_illum.MaskCollection attribute)
mask_type (corrct.struct_illum.MaskCollection attribute)
MaskCollection (class in corrct.struct_illum)
MaskGenerator (class in corrct.struct_illum)
MaskGeneratorBernoulli (class in corrct.struct_illum)
MaskGeneratorHalfGaussian (class in corrct.struct_illum)
MaskGeneratorMURA (class in corrct.struct_illum)
MaskGeneratorPoint (class in corrct.struct_illum)
masks_dec (corrct.struct_illum.MaskCollection attribute)
masks_enc (corrct.struct_illum.MaskCollection attribute)
max_iterations (corrct.solvers.SolutionInfo attribute)
mc (corrct.struct_illum.ProjectorGhostImaging attribute)
method (corrct.solvers.SolutionInfo attribute)
MLEM (class in corrct.solvers)
module
corrct
corrct.alignment
corrct.alignment.centering
corrct.alignment.fitting
corrct.alignment.shifts
corrct.attenuation
corrct.data_terms
corrct.denoisers
corrct.filters
corrct.models
corrct.operators
corrct.param_tuning
corrct.physics
corrct.physics.materials
corrct.physics.phase
corrct.physics.xraylib_helper
corrct.physics.xrf
corrct.processing
corrct.processing.misc
corrct.processing.post
corrct.processing.pre
corrct.projectors
corrct.regularizers
corrct.solvers
corrct.struct_illum
corrct.testing
N
name (corrct.physics.xrf.FluoLine attribute)
ndim (corrct.models.ProjectionGeometry property)
norm (corrct.filters.BasisOptionsWavelets attribute)
norm_cross_corr() (in module corrct.processing.misc)
normalized (corrct.filters.BasisOptionsBlocks attribute)
num_buckets (corrct.struct_illum.MaskCollection property)
(corrct.struct_illum.MaskGenerator property)
num_filters (corrct.filters.Filter property)
O
op (corrct.regularizers.BaseRegularizer attribute)
(corrct.regularizers.BaseRegularizer_med attribute)
(corrct.regularizers.Constraint_LowerLimit attribute)
(corrct.regularizers.Constraint_UpperLimit attribute)
(corrct.regularizers.Regularizer_dwl attribute)
(corrct.regularizers.Regularizer_fft attribute)
(corrct.regularizers.Regularizer_Grad attribute)
(corrct.regularizers.Regularizer_Hub_dwl attribute)
(corrct.regularizers.Regularizer_Hub_swl attribute)
(corrct.regularizers.Regularizer_HubTV2D attribute)
(corrct.regularizers.Regularizer_HubTV3D attribute)
(corrct.regularizers.Regularizer_l1 attribute)
(corrct.regularizers.Regularizer_l12dwl attribute)
(corrct.regularizers.Regularizer_l12swl attribute)
(corrct.regularizers.Regularizer_l1dwl attribute)
(corrct.regularizers.Regularizer_l1med attribute)
(corrct.regularizers.Regularizer_l1swl attribute)
(corrct.regularizers.Regularizer_l2med attribute)
(corrct.regularizers.Regularizer_lap attribute)
(corrct.regularizers.Regularizer_lap1D attribute)
(corrct.regularizers.Regularizer_lap2D attribute)
(corrct.regularizers.Regularizer_lap3D attribute)
(corrct.regularizers.Regularizer_lnswl attribute)
(corrct.regularizers.Regularizer_smooth1D attribute)
(corrct.regularizers.Regularizer_smooth2D attribute)
(corrct.regularizers.Regularizer_smooth3D attribute)
(corrct.regularizers.Regularizer_swl attribute)
(corrct.regularizers.Regularizer_TNV attribute)
(corrct.regularizers.Regularizer_TV1D attribute)
(corrct.regularizers.Regularizer_TV2D attribute)
(corrct.regularizers.Regularizer_TV3D attribute)
(corrct.regularizers.Regularizer_vl1wl attribute)
(corrct.regularizers.Regularizer_vSVD attribute)
(corrct.regularizers.Regularizer_VTV attribute)
order (corrct.filters.BasisOptionsBlocks attribute)
P
pad_mode (corrct.filters.Filter attribute)
(corrct.filters.FilterCustom attribute)
(corrct.operators.TransformConvolution attribute)
pad_sinogram() (in module corrct.processing.pre)
PDHG (class in corrct.solvers)
pencil_beam_profile() (in module corrct.physics)
phantom_assign_concentration() (in module corrct.testing)
phantom_assign_concentration_multi() (in module corrct.testing)
pix2vox_ratio (corrct.models.ProjectionGeometry attribute)
plot_effective_attenuation() (in module corrct.physics.materials)
plot_filters() (corrct.filters.Filter method)
plot_frcs() (in module corrct.processing.post)
plot_freq_responses() (in module corrct.physics.phase)
plot_map() (corrct.attenuation.AttenuationVolume method)
power_method() (corrct.solvers.PDHG method)
power_spectrum() (in module corrct.processing.post)
prj_intensities (corrct.projectors.ProjectorUncorrected attribute)
prj_shape (corrct.operators.ProjectorOperator property)
project_displacement_to_detector() (corrct.models.ProjectionGeometry method)
ProjectionGeometry (class in corrct.models)
projector (corrct.filters.FilterMR attribute)
projector_backend (corrct.projectors.ProjectorUncorrected attribute)
ProjectorAttenuationXRF (class in corrct.projectors)
ProjectorGhostImaging (class in corrct.struct_illum)
ProjectorMatrix (class in corrct.projectors)
ProjectorOperator (class in corrct.operators)
ProjectorUncorrected (class in corrct.projectors)
psf (corrct.projectors.ProjectorUncorrected attribute)
R
recenter_as() (corrct.alignment.centering.RecenterVolume method)
recenter_to() (corrct.alignment.centering.RecenterVolume method)
RecenterVolume (class in corrct.alignment.centering)
refine_max_position_1d() (in module corrct.alignment.fitting)
refine_max_position_2d() (in module corrct.alignment.fitting)
Regularizer_dwl (class in corrct.regularizers)
Regularizer_fft (class in corrct.regularizers)
Regularizer_Grad (class in corrct.regularizers)
Regularizer_Hub_dwl (class in corrct.regularizers)
Regularizer_Hub_swl (class in corrct.regularizers)
Regularizer_HubTV2D (class in corrct.regularizers)
Regularizer_HubTV3D (class in corrct.regularizers)
Regularizer_l1 (class in corrct.regularizers)
Regularizer_l12dwl (class in corrct.regularizers)
Regularizer_l12swl (class in corrct.regularizers)
Regularizer_l1dwl (class in corrct.regularizers)
Regularizer_l1med (class in corrct.regularizers)
Regularizer_l1swl (class in corrct.regularizers)
Regularizer_l2med (class in corrct.regularizers)
Regularizer_lap (class in corrct.regularizers)
Regularizer_lap1D (class in corrct.regularizers)
Regularizer_lap2D (class in corrct.regularizers)
Regularizer_lap3D (class in corrct.regularizers)
Regularizer_lnswl (class in corrct.regularizers)
Regularizer_smooth1D (class in corrct.regularizers)
Regularizer_smooth2D (class in corrct.regularizers)
Regularizer_smooth3D (class in corrct.regularizers)
Regularizer_swl (class in corrct.regularizers)
Regularizer_TNV (class in corrct.regularizers)
Regularizer_TV1D (class in corrct.regularizers)
Regularizer_TV2D (class in corrct.regularizers)
Regularizer_TV3D (class in corrct.regularizers)
Regularizer_vl1wl (class in corrct.regularizers)
Regularizer_vSVD (class in corrct.regularizers)
Regularizer_VTV (class in corrct.regularizers)
reorder_masks() (in module corrct.struct_illum)
residual0 (corrct.solvers.SolutionInfo attribute)
residual0_cv (corrct.solvers.SolutionInfo attribute)
residuals (corrct.solvers.SolutionInfo attribute)
residuals_cv (corrct.solvers.SolutionInfo attribute)
residuals_cv_rel (corrct.solvers.SolutionInfo property)
residuals_rel (corrct.solvers.SolutionInfo property)
rmatvec() (corrct.operators.BaseTransform method)
rot_dir_xyz (corrct.models.ProjectionGeometry attribute)
rotate() (corrct.models.ProjectionGeometry method)
rotate_proj_stack() (in module corrct.processing.pre)
roundup_to_pow2() (in module corrct.testing)
S
SART (class in corrct.solvers)
scale (corrct.operators.TransformDiagonalScaling attribute)
set_detector_shifts_vu() (corrct.models.ProjectionGeometry method)
set_detector_tilt() (corrct.models.ProjectionGeometry method)
set_source_shifts_vu() (corrct.models.ProjectionGeometry method)
shape_FoV (corrct.struct_illum.MaskCollection property)
(corrct.struct_illum.MaskGenerator attribute)
(corrct.struct_illum.MaskGeneratorBernoulli attribute)
(corrct.struct_illum.MaskGeneratorHalfGaussian attribute)
(corrct.struct_illum.MaskGeneratorMURA attribute)
(corrct.struct_illum.MaskGeneratorPoint attribute)
shape_mask (corrct.struct_illum.MaskGenerator attribute)
(corrct.struct_illum.MaskGeneratorBernoulli attribute)
(corrct.struct_illum.MaskGeneratorHalfGaussian attribute)
(corrct.struct_illum.MaskGeneratorMURA attribute)
(corrct.struct_illum.MaskGeneratorPoint attribute)
shape_shifts (corrct.struct_illum.MaskCollection property)
(corrct.struct_illum.MaskGenerator attribute)
(corrct.struct_illum.MaskGeneratorBernoulli attribute)
(corrct.struct_illum.MaskGeneratorHalfGaussian attribute)
(corrct.struct_illum.MaskGeneratorMURA attribute)
(corrct.struct_illum.MaskGeneratorPoint attribute)
shape_xyz (corrct.models.VolumeGeometry property)
shape_zxy (corrct.models.VolumeGeometry property)
shift_proj_stack() (in module corrct.processing.pre)
sigma (corrct.data_terms.DataFidelity_Huber attribute)
(corrct.data_terms.DataFidelity_KL attribute)
(corrct.data_terms.DataFidelity_l1 attribute)
(corrct.data_terms.DataFidelity_l12 attribute)
(corrct.data_terms.DataFidelity_l1b attribute)
(corrct.data_terms.DataFidelity_l2 attribute)
(corrct.data_terms.DataFidelity_l2b attribute)
(corrct.data_terms.DataFidelity_ln attribute)
(corrct.data_terms.DataFidelity_wl2 attribute)
(corrct.data_terms.DataFidelityBase attribute)
(corrct.regularizers.BaseRegularizer attribute)
(corrct.regularizers.BaseRegularizer_med attribute)
(corrct.regularizers.Constraint_LowerLimit attribute)
(corrct.regularizers.Constraint_UpperLimit attribute)
(corrct.regularizers.Regularizer_dwl attribute)
(corrct.regularizers.Regularizer_fft attribute)
(corrct.regularizers.Regularizer_Grad attribute)
(corrct.regularizers.Regularizer_Hub_dwl attribute)
(corrct.regularizers.Regularizer_Hub_swl attribute)
(corrct.regularizers.Regularizer_HubTV2D attribute)
(corrct.regularizers.Regularizer_HubTV3D attribute)
(corrct.regularizers.Regularizer_l1 attribute)
(corrct.regularizers.Regularizer_l12dwl attribute)
(corrct.regularizers.Regularizer_l12swl attribute)
(corrct.regularizers.Regularizer_l1dwl attribute)
(corrct.regularizers.Regularizer_l1med attribute)
(corrct.regularizers.Regularizer_l1swl attribute)
(corrct.regularizers.Regularizer_l2med attribute)
(corrct.regularizers.Regularizer_lap attribute)
(corrct.regularizers.Regularizer_lap1D attribute)
(corrct.regularizers.Regularizer_lap2D attribute)
(corrct.regularizers.Regularizer_lap3D attribute)
(corrct.regularizers.Regularizer_lnswl attribute)
(corrct.regularizers.Regularizer_smooth1D attribute)
(corrct.regularizers.Regularizer_smooth2D attribute)
(corrct.regularizers.Regularizer_smooth3D attribute)
(corrct.regularizers.Regularizer_swl attribute)
(corrct.regularizers.Regularizer_TNV attribute)
(corrct.regularizers.Regularizer_TV1D attribute)
(corrct.regularizers.Regularizer_TV2D attribute)
(corrct.regularizers.Regularizer_TV3D attribute)
(corrct.regularizers.Regularizer_vl1wl attribute)
(corrct.regularizers.Regularizer_vSVD attribute)
(corrct.regularizers.Regularizer_VTV attribute)
sigma_data (corrct.data_terms.DataFidelity_Huber attribute)
(corrct.data_terms.DataFidelity_KL attribute)
(corrct.data_terms.DataFidelity_l1 attribute)
(corrct.data_terms.DataFidelity_l12 attribute)
(corrct.data_terms.DataFidelity_l1b attribute)
(corrct.data_terms.DataFidelity_l2 attribute)
(corrct.data_terms.DataFidelity_l2b attribute)
(corrct.data_terms.DataFidelity_ln attribute)
(corrct.data_terms.DataFidelity_wl2 attribute)
(corrct.data_terms.DataFidelityBase attribute)
sinusoid() (in module corrct.alignment.fitting)
SIRT (class in corrct.solvers)
solid_angle_sr (corrct.physics.xrf.DetectorXRF property)
SolutionInfo (class in corrct.solvers)
Solver (class in corrct.solvers)
solver_calling_function (corrct.param_tuning.BaseRegularizationEstimation property)
solver_spawning_function (corrct.param_tuning.BaseRegularizationEstimation property)
src_pos_xyz (corrct.models.ProjectionGeometry attribute)
surface_mm2 (corrct.physics.xrf.DetectorXRF attribute)
T
to_fourier() (corrct.filters.Filter method)
to_real() (corrct.filters.Filter method)
tolerance (corrct.solvers.SolutionInfo attribute)
TransformConvolution (class in corrct.operators)
TransformDecimatedWavelet (class in corrct.operators)
TransformDiagonalScaling (class in corrct.operators)
TransformFourier (class in corrct.operators)
TransformFunctions (class in corrct.operators)
TransformGradient (class in corrct.operators)
TransformIdentity (class in corrct.operators)
TransformLaplacian (class in corrct.operators)
TransformStationaryWavelet (class in corrct.operators)
TransformSVD (class in corrct.operators)
transmittance (corrct.struct_illum.MaskGenerator attribute)
(corrct.struct_illum.MaskGeneratorBernoulli attribute)
(corrct.struct_illum.MaskGeneratorHalfGaussian attribute)
(corrct.struct_illum.MaskGeneratorMURA attribute)
(corrct.struct_illum.MaskGeneratorPoint attribute)
U
U (corrct.operators.TransformSVD attribute)
upd_mask (corrct.regularizers.BaseRegularizer attribute)
(corrct.regularizers.BaseRegularizer_med attribute)
(corrct.regularizers.Constraint_LowerLimit attribute)
(corrct.regularizers.Constraint_UpperLimit attribute)
(corrct.regularizers.Regularizer_dwl attribute)
(corrct.regularizers.Regularizer_fft attribute)
(corrct.regularizers.Regularizer_Grad attribute)
(corrct.regularizers.Regularizer_Hub_dwl attribute)
(corrct.regularizers.Regularizer_Hub_swl attribute)
(corrct.regularizers.Regularizer_HubTV2D attribute)
(corrct.regularizers.Regularizer_HubTV3D attribute)
(corrct.regularizers.Regularizer_l1 attribute)
(corrct.regularizers.Regularizer_l12dwl attribute)
(corrct.regularizers.Regularizer_l12swl attribute)
(corrct.regularizers.Regularizer_l1dwl attribute)
(corrct.regularizers.Regularizer_l1med attribute)
(corrct.regularizers.Regularizer_l1swl attribute)
(corrct.regularizers.Regularizer_l2med attribute)
(corrct.regularizers.Regularizer_lap attribute)
(corrct.regularizers.Regularizer_lap1D attribute)
(corrct.regularizers.Regularizer_lap2D attribute)
(corrct.regularizers.Regularizer_lap3D attribute)
(corrct.regularizers.Regularizer_lnswl attribute)
(corrct.regularizers.Regularizer_smooth1D attribute)
(corrct.regularizers.Regularizer_smooth2D attribute)
(corrct.regularizers.Regularizer_smooth3D attribute)
(corrct.regularizers.Regularizer_swl attribute)
(corrct.regularizers.Regularizer_TNV attribute)
(corrct.regularizers.Regularizer_TV1D attribute)
(corrct.regularizers.Regularizer_TV2D attribute)
(corrct.regularizers.Regularizer_TV3D attribute)
(corrct.regularizers.Regularizer_vl1wl attribute)
(corrct.regularizers.Regularizer_vSVD attribute)
(corrct.regularizers.Regularizer_VTV attribute)
update_dual() (corrct.data_terms.DataFidelityBase method)
(corrct.regularizers.BaseRegularizer method)
(corrct.regularizers.BaseRegularizer_med method)
(corrct.regularizers.Constraint_LowerLimit method)
(corrct.regularizers.Constraint_UpperLimit method)
(corrct.regularizers.Regularizer_dwl method)
(corrct.regularizers.Regularizer_l1 method)
(corrct.regularizers.Regularizer_swl method)
upper() (corrct.data_terms.DataFidelityBase method)
(corrct.regularizers.BaseRegularizer method)
(corrct.solvers.Solver method)
(corrct.struct_illum.MaskCollection method)
use_rfft (corrct.filters.Filter attribute)
(corrct.filters.FilterCustom attribute)
V
vol_geom (corrct.projectors.ProjectorUncorrected attribute)
vol_shape (corrct.operators.ProjectorOperator property)
vol_shape_zyx (corrct.attenuation.AttenuationVolume attribute)
VolumeGeometry (class in corrct.models)
VolumeMaterial (class in corrct.physics.materials)
vox_size (corrct.models.VolumeGeometry attribute)
Vt (corrct.operators.TransformSVD attribute)
W
wavelet (corrct.filters.BasisOptionsWavelets attribute)
(corrct.operators.BaseWaveletTransform attribute)
(corrct.operators.TransformDecimatedWavelet attribute)
(corrct.operators.TransformStationaryWavelet attribute)
weight (corrct.regularizers.BaseRegularizer attribute)
(corrct.regularizers.BaseRegularizer_med attribute)
(corrct.regularizers.Constraint_LowerLimit attribute)
(corrct.regularizers.Constraint_UpperLimit attribute)
(corrct.regularizers.Regularizer_dwl attribute)
(corrct.regularizers.Regularizer_fft attribute)
(corrct.regularizers.Regularizer_Grad attribute)
(corrct.regularizers.Regularizer_Hub_dwl attribute)
(corrct.regularizers.Regularizer_Hub_swl attribute)
(corrct.regularizers.Regularizer_HubTV2D attribute)
(corrct.regularizers.Regularizer_HubTV3D attribute)
(corrct.regularizers.Regularizer_l1 attribute)
(corrct.regularizers.Regularizer_l12dwl attribute)
(corrct.regularizers.Regularizer_l12swl attribute)
(corrct.regularizers.Regularizer_l1dwl attribute)
(corrct.regularizers.Regularizer_l1med attribute)
(corrct.regularizers.Regularizer_l1swl attribute)
(corrct.regularizers.Regularizer_l2med attribute)
(corrct.regularizers.Regularizer_lap attribute)
(corrct.regularizers.Regularizer_lap1D attribute)
(corrct.regularizers.Regularizer_lap2D attribute)
(corrct.regularizers.Regularizer_lap3D attribute)
(corrct.regularizers.Regularizer_lnswl attribute)
(corrct.regularizers.Regularizer_smooth1D attribute)
(corrct.regularizers.Regularizer_smooth2D attribute)
(corrct.regularizers.Regularizer_smooth3D attribute)
(corrct.regularizers.Regularizer_swl attribute)
(corrct.regularizers.Regularizer_TNV attribute)
(corrct.regularizers.Regularizer_TV1D attribute)
(corrct.regularizers.Regularizer_TV2D attribute)
(corrct.regularizers.Regularizer_TV3D attribute)
(corrct.regularizers.Regularizer_vl1wl attribute)
(corrct.regularizers.Regularizer_vSVD attribute)
(corrct.regularizers.Regularizer_VTV attribute)